Variant report

Variant	rs10112212
Chromosome Location	chr8:85098338-85098339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10099120	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12546578	0.90[YRI][hapmap]
rs16912508	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1898464	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1898466	0.83[YRI][hapmap]
rs60194646	1.00[ASN][1000 genomes]
rs62528124	0.98[ASN][1000 genomes]
rs62528125	0.98[ASN][1000 genomes]
rs62528126	0.98[ASN][1000 genomes]
rs62528128	0.98[ASN][1000 genomes]
rs62528130	0.93[ASN][1000 genomes]
rs6473528	0.92[AFR][1000 genomes]
rs7010829	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662110	0.98[ASN][1000 genomes]
rs72662111	0.98[ASN][1000 genomes]
rs7822580	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7845189	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv611646	chr8:85048690-85112377	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85094000-85098600	Active TSS	Brain Anterior Caudate	brain
2	chr8:85094600-85098600	Active TSS	Right Atrium	heart
3	chr8:85097000-85099000	Bivalent/Poised TSS	Fetal Brain Male	brain
4	chr8:85097600-85099400	Active TSS	Fetal Brain Female	brain
5	chr8:85097800-85098600	Active TSS	Brain Angular Gyrus	brain
6	chr8:85097800-85098800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr8:85098200-85099000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:85098200-85099400	Active TSS	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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