Variant report

Variant	rs1898464
Chromosome Location	chr8:85097500-85097501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10099120	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10112212	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912508	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60194646	0.96[ASN][1000 genomes]
rs62528124	0.94[ASN][1000 genomes]
rs62528125	0.94[ASN][1000 genomes]
rs62528126	0.94[ASN][1000 genomes]
rs62528128	0.94[ASN][1000 genomes]
rs62528130	0.90[ASN][1000 genomes]
rs6473528	0.89[AFR][1000 genomes]
rs7010829	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662110	0.94[ASN][1000 genomes]
rs72662111	0.94[ASN][1000 genomes]
rs7822580	0.91[ASN][1000 genomes]
rs7845189	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv611646	chr8:85048690-85112377	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85093800-85097600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:85093800-85097600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:85094000-85098600	Active TSS	Brain Anterior Caudate	brain
4	chr8:85094200-85097800	Bivalent/Poised TSS	Fetal Kidney	kidney
5	chr8:85094200-85098000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr8:85094400-85098200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr8:85094600-85097600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chr8:85094600-85098200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
9	chr8:85094600-85098600	Active TSS	Right Atrium	heart
10	chr8:85094800-85098200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:85095200-85097600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr8:85095400-85098200	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr8:85096400-85097600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:85096600-85097600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:85096600-85097800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
16	chr8:85096600-85098200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr8:85097000-85099000	Bivalent/Poised TSS	Fetal Brain Male	brain
18	chr8:85097200-85097600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr8:85097200-85097600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr8:85097200-85097800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr8:85097400-85097600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:85097400-85097600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
23	chr8:85097400-85097600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
24	chr8:85097400-85097600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:85097400-85097600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
26	chr8:85097400-85097600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
27	chr8:85097400-85097800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum

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