Variant report

Variant	rs10112539
Chromosome Location	chr8:2125406-2125407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:2120937..2122979-chr8:2125168..2127127,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11987927	0.93[EUR][1000 genomes]
rs11988606	0.90[EUR][1000 genomes]
rs11991574	0.88[EUR][1000 genomes]
rs17064772	0.93[EUR][1000 genomes]
rs17064774	0.93[EUR][1000 genomes]
rs17064779	0.93[EUR][1000 genomes]
rs17758377	0.90[EUR][1000 genomes]
rs17831401	0.93[EUR][1000 genomes]
rs2280900	0.93[EUR][1000 genomes]
rs2280903	0.88[EUR][1000 genomes]
rs28612497	0.82[EUR][1000 genomes]
rs34071132	0.86[EUR][1000 genomes]
rs34760293	0.90[EUR][1000 genomes]
rs34789086	0.83[EUR][1000 genomes]
rs34815172	0.86[EUR][1000 genomes]
rs34826206	0.90[EUR][1000 genomes]
rs34932258	0.84[EUR][1000 genomes]
rs35433772	0.86[EUR][1000 genomes]
rs35454276	0.86[EUR][1000 genomes]
rs35668154	0.80[EUR][1000 genomes]
rs35835808	0.88[EUR][1000 genomes]
rs35843254	0.84[EUR][1000 genomes]
rs3736658	0.86[EUR][1000 genomes]
rs3779820	0.88[EUR][1000 genomes]
rs3779822	0.88[EUR][1000 genomes]
rs3779824	0.82[EUR][1000 genomes]
rs3779825	0.82[EUR][1000 genomes]
rs3824168	0.86[EUR][1000 genomes]
rs3824170	0.93[EUR][1000 genomes]
rs3824171	0.86[EUR][1000 genomes]
rs3824173	0.86[EUR][1000 genomes]
rs3824175	0.86[EUR][1000 genomes]
rs3824176	0.86[EUR][1000 genomes]
rs3824177	0.86[EUR][1000 genomes]
rs3824179	0.86[EUR][1000 genomes]
rs3824180	0.86[EUR][1000 genomes]
rs3824181	0.86[EUR][1000 genomes]
rs3824182	0.86[EUR][1000 genomes]
rs3824183	0.86[EUR][1000 genomes]
rs4391460	0.84[EUR][1000 genomes]
rs4395914	0.86[EUR][1000 genomes]
rs4637863	0.86[EUR][1000 genomes]
rs5023991	0.81[EUR][1000 genomes]
rs5023993	0.81[EUR][1000 genomes]
rs5023995	0.82[EUR][1000 genomes]
rs5023996	0.82[EUR][1000 genomes]
rs5023998	0.82[EUR][1000 genomes]
rs5029665	0.82[EUR][1000 genomes]
rs5029666	0.82[EUR][1000 genomes]
rs59279920	0.86[EUR][1000 genomes]
rs60166746	0.86[EUR][1000 genomes]
rs61610885	0.86[EUR][1000 genomes]
rs62479966	0.86[EUR][1000 genomes]
rs62479969	0.86[EUR][1000 genomes]
rs62479971	0.86[EUR][1000 genomes]
rs62479972	0.86[EUR][1000 genomes]
rs62479973	0.83[EUR][1000 genomes]
rs6985716	0.88[EUR][1000 genomes]
rs6991515	0.93[EUR][1000 genomes]
rs7003986	0.88[EUR][1000 genomes]
rs7014505	0.93[EUR][1000 genomes]
rs72507660	0.86[EUR][1000 genomes]
rs72621162	0.83[EUR][1000 genomes]
rs72643414	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73552747	0.93[EUR][1000 genomes]
rs73657731	0.86[EUR][1000 genomes]
rs73657732	0.86[EUR][1000 genomes]
rs73657733	0.86[EUR][1000 genomes]
rs73657735	0.86[EUR][1000 genomes]
rs73657736	0.86[EUR][1000 genomes]
rs73657737	0.86[EUR][1000 genomes]
rs73657738	0.86[EUR][1000 genomes]
rs73657739	0.86[EUR][1000 genomes]
rs73657742	0.86[EUR][1000 genomes]
rs73657744	0.86[EUR][1000 genomes]
rs73657745	0.86[EUR][1000 genomes]
rs73657746	0.86[EUR][1000 genomes]
rs73657747	0.86[EUR][1000 genomes]
rs73657748	0.86[EUR][1000 genomes]
rs73657749	0.86[EUR][1000 genomes]
rs73657750	0.86[EUR][1000 genomes]
rs73657751	0.86[EUR][1000 genomes]
rs73657752	0.86[EUR][1000 genomes]
rs73657753	0.86[EUR][1000 genomes]
rs73657754	0.86[EUR][1000 genomes]
rs73657755	0.82[EUR][1000 genomes]
rs73657756	0.86[EUR][1000 genomes]
rs73657757	0.86[EUR][1000 genomes]
rs73657758	0.86[EUR][1000 genomes]
rs73657760	0.84[EUR][1000 genomes]
rs73657761	0.84[EUR][1000 genomes]
rs73657762	0.84[EUR][1000 genomes]
rs73657763	0.84[EUR][1000 genomes]
rs73657767	0.82[EUR][1000 genomes]
rs73657774	0.82[EUR][1000 genomes]
rs73657775	0.82[EUR][1000 genomes]
rs73657776	0.82[EUR][1000 genomes]
rs73657777	0.82[EUR][1000 genomes]
rs73657778	0.82[EUR][1000 genomes]
rs73657779	0.82[EUR][1000 genomes]
rs73657780	0.82[EUR][1000 genomes]
rs73657781	0.82[EUR][1000 genomes]
rs73657783	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2118600-2128800	Weak transcription	Spleen	Spleen
2	chr8:2119400-2128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:2119400-2130400	Weak transcription	Pancreas	Pancrea
4	chr8:2121600-2128800	Weak transcription	Right Atrium	heart
5	chr8:2122800-2126000	Weak transcription	Fetal Thymus	thymus
6	chr8:2122800-2129600	Weak transcription	Right Ventricle	heart
7	chr8:2123200-2130600	Weak transcription	Psoas Muscle	Psoas
8	chr8:2125200-2125800	Weak transcription	Fetal Brain Male	brain

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