Variant report

Variant	rs3824183
Chromosome Location	chr8:2079018-2079019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:2078784..2080957-chr8:2082526..2085808,3	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10112539	0.86[EUR][1000 genomes]
rs11987927	0.93[EUR][1000 genomes]
rs11988606	0.91[EUR][1000 genomes]
rs11991574	0.89[EUR][1000 genomes]
rs17064772	0.93[EUR][1000 genomes]
rs17064774	0.93[EUR][1000 genomes]
rs17064779	0.93[EUR][1000 genomes]
rs17758377	0.95[EUR][1000 genomes]
rs17831401	0.93[EUR][1000 genomes]
rs2280900	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280903	0.89[EUR][1000 genomes]
rs28569941	0.81[ASN][1000 genomes]
rs28612497	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34071132	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34268364	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34760293	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34789086	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34804934	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34815172	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34826206	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34932258	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35433772	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35454276	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35668154	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35835808	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35843254	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35920006	0.94[ASN][1000 genomes]
rs36098404	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs36106919	0.83[AFR][1000 genomes]
rs3736658	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3779820	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3779822	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3779824	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779825	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824168	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824170	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824171	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824173	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391460	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4395914	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4637863	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5023991	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5023993	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5023995	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5023996	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5023998	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5029665	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5029666	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5029667	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5029668	0.88[ASN][1000 genomes]
rs5029669	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59279920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60166746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61610885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62479966	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62479969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62479971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62479972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62479973	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6985716	0.89[EUR][1000 genomes]
rs6991515	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7003986	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7014505	0.93[EUR][1000 genomes]
rs72507660	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72621162	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73552747	0.93[EUR][1000 genomes]
rs73657730	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73657731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73657732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657734	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657735	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657736	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657737	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657738	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657739	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657741	0.81[ASN][1000 genomes]
rs73657742	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657743	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657744	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657745	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657746	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657747	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657748	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657749	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657750	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657751	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657752	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657753	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657754	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657755	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657756	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657757	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657758	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657760	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657761	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73657762	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657763	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657764	0.81[ASN][1000 genomes]
rs73657765	0.81[ASN][1000 genomes]
rs73657766	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657767	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657768	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73657770	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657771	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73657773	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73657774	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657775	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657776	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657777	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657778	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657779	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657780	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657781	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73657783	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3824183	MYOM2	cis	lung	GTEx
rs3824183	MYOM2	cis	Whole Blood	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2075400-2084000	Weak transcription	Spleen	Spleen
2	chr8:2075600-2092600	Weak transcription	Esophagus	oesophagus
3	chr8:2075800-2080800	Weak transcription	Pancreas	Pancrea
4	chr8:2075800-2086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:2075800-2091400	Weak transcription	Gastric	stomach
6	chr8:2076000-2082400	Weak transcription	Aorta	Aorta
7	chr8:2076000-2085200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:2076000-2085200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:2076000-2087000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:2076000-2092800	Weak transcription	Brain Angular Gyrus	brain
11	chr8:2076000-2093400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:2076000-2094400	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
14	chr8:2076200-2083600	Enhancers	Fetal Thymus	thymus
15	chr8:2076200-2085200	Weak transcription	Liver	Liver
16	chr8:2076200-2092400	Weak transcription	HSMMtube	muscle
17	chr8:2076400-2079200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr8:2076400-2086600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:2076400-2097800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:2076600-2079600	Strong transcription	Fetal Muscle Leg	muscle
21	chr8:2076600-2085000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr8:2076600-2092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:2076600-2096800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:2076800-2079200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr8:2076800-2079400	Strong transcription	Left Ventricle	heart
26	chr8:2077000-2079200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr8:2077400-2079600	Enhancers	Dnd41	blood
28	chr8:2078200-2083600	Weak transcription	Right Ventricle	heart
29	chr8:2078200-2085000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:2078200-2089600	Weak transcription	Psoas Muscle	Psoas
31	chr8:2078400-2079800	Enhancers	Primary hematopoietic stem cells	blood
32	chr8:2078600-2079400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:2078600-2079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:2078600-2079600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr8:2078600-2079600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:2078600-2079600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:2078600-2079600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:2078800-2079200	Enhancers	Primary B cells from cord blood	blood
39	chr8:2078800-2079200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:2078800-2079400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr8:2078800-2079400	Strong transcription	Fetal Heart	heart
42	chr8:2078800-2079600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr8:2078800-2079600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:2079000-2079200	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr8:2079000-2079200	Flanking Active TSS	Thymus	Thymus
46	chr8:2079000-2079400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:2079000-2079400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:2079000-2079400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr8:2079000-2079400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr8:2079000-2079400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links