Variant report

Variant	rs10112945
Chromosome Location	chr8:65677331-65677332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10098783	0.90[ASN][1000 genomes]
rs10283033	0.89[ASN][1000 genomes]
rs10808740	0.86[EUR][1000 genomes]
rs10957324	0.90[AFR][1000 genomes]
rs13258167	0.89[EUR][1000 genomes]
rs13271194	0.89[ASN][1000 genomes]
rs13282180	0.87[EUR][1000 genomes]
rs2356985	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2356986	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2884073	0.86[EUR][1000 genomes]
rs2884074	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28873972	0.89[EUR][1000 genomes]
rs34237366	0.89[EUR][1000 genomes]
rs34484820	0.87[EUR][1000 genomes]
rs34700548	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4236936	0.89[ASN][1000 genomes]
rs4258041	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4269577	0.90[ASN][1000 genomes]
rs4385495	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4392942	0.89[ASN][1000 genomes]
rs4472561	0.90[ASN][1000 genomes]
rs4549812	0.90[ASN][1000 genomes]
rs4737681	0.87[AFR][1000 genomes]
rs4737683	0.83[AFR][1000 genomes]
rs55863909	0.82[AFR][1000 genomes]
rs58195923	0.82[AFR][1000 genomes]
rs62521111	0.87[EUR][1000 genomes]
rs62521112	0.81[EUR][1000 genomes]
rs62521114	0.87[EUR][1000 genomes]
rs6472151	0.90[ASN][1000 genomes]
rs6472152	0.90[ASN][1000 genomes]
rs6472154	0.88[ASN][1000 genomes]
rs6987861	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995461	0.89[EUR][1000 genomes]
rs7009078	0.89[EUR][1000 genomes]
rs716283	0.87[EUR][1000 genomes]
rs7462059	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7814191	0.89[ASN][1000 genomes]
rs7821085	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7829301	0.89[ASN][1000 genomes]
rs7842113	0.90[ASN][1000 genomes]
rs9918790	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv981948	chr8:65675044-65680977	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65666600-65679400	Weak transcription	Pancreas	Pancrea
2	chr8:65671600-65682200	Weak transcription	Esophagus	oesophagus
3	chr8:65672000-65677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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