Variant report

Variant	rs4258041
Chromosome Location	chr8:65701101-65701102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65700942..65702959-chr8:65710837..65712799,2	K562	blood:

Variant related genes	Relation type
ENSG00000172817	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10098783	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10112945	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10283033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10808740	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10957319	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs10957324	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs11984829	0.83[CEU][hapmap]
rs11992694	0.83[CEU][hapmap]
rs13258167	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs13271194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13282180	0.87[EUR][1000 genomes]
rs16931350	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs16931360	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs2356985	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2356986	0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2884073	0.86[EUR][1000 genomes]
rs2884074	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28873972	0.89[EUR][1000 genomes]
rs34237366	0.89[EUR][1000 genomes]
rs34484820	0.87[EUR][1000 genomes]
rs34700548	0.87[EUR][1000 genomes]
rs3824188	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4236936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4269577	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4385495	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs4392942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4397440	0.91[CHB][hapmap]
rs4472561	0.88[ASN][1000 genomes]
rs4527914	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4549812	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4737681	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs4737682	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4737683	0.90[AFR][1000 genomes]
rs55863909	0.89[AFR][1000 genomes]
rs58195923	0.89[AFR][1000 genomes]
rs62521111	0.87[EUR][1000 genomes]
rs62521112	0.81[EUR][1000 genomes]
rs62521114	0.87[EUR][1000 genomes]
rs6472151	0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6472152	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs6472154	0.90[ASN][1000 genomes]
rs6987861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995461	0.89[EUR][1000 genomes]
rs7009078	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs716283	0.87[EUR][1000 genomes]
rs7462059	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7814191	0.91[ASN][1000 genomes]
rs7821085	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7831851	0.87[YRI][hapmap]
rs7842113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9918790	0.83[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65694800-65709800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:65699800-65706600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:65699800-65709200	Weak transcription	Liver	Liver
4	chr8:65699800-65709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:65700000-65710600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:65700800-65701200	ZNF genes & repeats	Ovary	ovary

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