Variant report

Variant	rs16931360
Chromosome Location	chr8:65580861-65580862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65579416..65581773-chr8:65583338..65585855,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10098783	0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap]
rs10283033	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs10957319	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271194	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs13276281	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[EUR][1000 genomes]
rs13278548	0.82[EUR][1000 genomes]
rs1451869	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[EUR][1000 genomes]
rs16931350	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16931358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356986	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs2884074	0.81[CHB][hapmap]
rs3779869	0.87[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs3824188	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4236936	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4258041	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4269577	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs4392942	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4397440	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4527914	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4549812	0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap]
rs4737682	0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap]
rs60471153	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472151	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs6987861	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs7004523	1.00[ASW][hapmap]
rs7821085	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs7822429	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[EUR][1000 genomes]
rs7829301	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs7842113	0.91[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6231	chr8:65538593-65583623	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv3444272	chr8:65580428-65580938	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65571400-65585400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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