Variant report

Variant	rs13276281
Chromosome Location	chr8:65506155-65506156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65491313..65493385-chr8:65504347..65507229,2	K562	blood:

Variant related genes	Relation type
ENSG00000180828	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10098783	1.00[MEX][hapmap]
rs10957319	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13278548	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1451869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931350	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16931358	0.88[EUR][1000 genomes]
rs16931360	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[EUR][1000 genomes]
rs16931363	0.88[EUR][1000 genomes]
rs3779869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824188	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4236936	1.00[MEX][hapmap]
rs4269577	1.00[MEX][hapmap]
rs4397440	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4527914	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4549812	1.00[MEX][hapmap]
rs4737682	1.00[MEX][hapmap]
rs60471153	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60695690	0.85[AMR][1000 genomes]
rs6472151	1.00[MEX][hapmap]
rs6472152	1.00[MEX][hapmap]
rs7822429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65502000-65506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:65503600-65514400	Weak transcription	Fetal Lung	lung
5	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
6	chr8:65504200-65512200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:65504600-65507200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:65505800-65521400	Weak transcription	Fetal Muscle Trunk	muscle

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