Variant report
| Variant | rs60695690 |
|---|---|
| Chromosome Location | chr8:65483478-65483479 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CYP7B1-7 | chr8:65483470-65483889 | NONHSAT126966 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10097877 | 0.85[ASN][1000 genomes] |
| rs13276281 | 0.85[AMR][1000 genomes] |
| rs13278548 | 0.85[AMR][1000 genomes] |
| rs1376769 | 0.89[ASN][1000 genomes] |
| rs1451869 | 0.85[AMR][1000 genomes] |
| rs16931350 | 0.82[AMR][1000 genomes] |
| rs3779869 | 0.85[AMR][1000 genomes] |
| rs3824188 | 0.82[AMR][1000 genomes] |
| rs6995055 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7822429 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
