Variant report

Variant	rs3779869
Chromosome Location	chr8:65518357-65518358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10957319	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13276281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13278548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1451869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16931350	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16931358	0.88[EUR][1000 genomes]
rs16931360	0.87[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs16931363	0.88[EUR][1000 genomes]
rs3824188	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4397440	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4527914	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs60471153	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60695690	0.85[AMR][1000 genomes]
rs7822429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
4	chr8:65505800-65521400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:65507400-65526400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:65507600-65520200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:65507800-65527200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:65510000-65525400	Weak transcription	Esophagus	oesophagus
9	chr8:65510400-65527400	Weak transcription	Adipose Nuclei	Adipose
10	chr8:65513200-65519000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:65515600-65528200	Weak transcription	Brain Substantia Nigra	brain
12	chr8:65516600-65521800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:65516600-65522000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:65517200-65540000	Weak transcription	Fetal Stomach	stomach
15	chr8:65517200-65540200	Weak transcription	Fetal Lung	lung
16	chr8:65517400-65518400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:65517400-65518600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:65517400-65518800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:65517400-65521400	Enhancers	Fetal Brain Male	brain
20	chr8:65517400-65535400	Weak transcription	Brain Anterior Caudate	brain
21	chr8:65517400-65540800	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:65517600-65518600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:65517600-65520400	Weak transcription	Spleen	Spleen
24	chr8:65517800-65518600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:65517800-65518600	Weak transcription	Liver	Liver
26	chr8:65518000-65518400	Weak transcription	Ovary	ovary
27	chr8:65518000-65519000	Enhancers	NH-A	brain
28	chr8:65518000-65521200	Enhancers	Fetal Brain Female	brain
29	chr8:65518200-65519400	Weak transcription	Brain Germinal Matrix	brain
30	chr8:65518200-65522400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:65518200-65522400	Weak transcription	NHEK	skin
32	chr8:65518200-65523400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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