Variant report

Variant	rs10957319
Chromosome Location	chr8:65549261-65549262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10098783	0.82[CHB][hapmap]
rs10283033	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs13271194	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs13276281	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13278548	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1451869	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16931350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16931358	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16931360	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16931363	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356986	0.82[CHB][hapmap]
rs2884074	0.81[CHB][hapmap]
rs3779869	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824188	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4236936	0.91[CHB][hapmap]
rs4258041	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs4269577	0.82[CHB][hapmap]
rs4392942	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs4397440	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4527914	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4549812	0.82[CHB][hapmap]
rs4737682	0.82[CHB][hapmap]
rs60471153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472151	0.82[CHB][hapmap]
rs6472152	0.81[CHD][hapmap]
rs6987861	0.91[CHB][hapmap]
rs7821085	0.91[CHB][hapmap]
rs7822429	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7829301	0.91[CHB][hapmap]
rs7842113	0.92[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6231	chr8:65538593-65583623	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65549200-65549400	Enhancers	GM12878-XiMat	blood

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