Variant report

Variant	rs10113019
Chromosome Location	chr8:120914726-120914727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093746	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10098796	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10101222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102102	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109920	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13439791	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2139432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28393075	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436011	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28447970	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28449953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28570063	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28575743	0.80[AFR][1000 genomes]
rs28589493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28701610	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4871029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4871774	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4871792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4871818	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7006490	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012755	0.85[AFR][1000 genomes]
rs72673603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673616	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72690149	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843631	0.80[AFR][1000 genomes]
rs9656932	0.85[AFR][1000 genomes]
rs9987078	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9987272	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv427826	chr8:120642181-120953395	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv972194	chr8:120898451-120965081	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1018953	chr8:120910380-120954832	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120903000-120924600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:120905600-120919200	Weak transcription	Fetal Kidney	kidney
3	chr8:120905800-120917400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:120905800-120918800	Weak transcription	Fetal Stomach	stomach
5	chr8:120906400-120915600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:120907800-120917200	Weak transcription	Brain Substantia Nigra	brain
7	chr8:120908000-120915200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:120908200-120918600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:120908800-120915800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:120908800-120926000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:120908800-120927600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:120909000-120915800	Weak transcription	Gastric	stomach
13	chr8:120909000-120915800	Weak transcription	Psoas Muscle	Psoas
14	chr8:120909000-120917400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:120909000-120917400	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:120909000-120923400	Weak transcription	Fetal Intestine Small	intestine
17	chr8:120909000-120927200	Weak transcription	Fetal Intestine Large	intestine
18	chr8:120909000-120927600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:120910600-120917400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:120910800-120927600	Weak transcription	Small Intestine	intestine
21	chr8:120911000-120923000	Weak transcription	Ovary	ovary
22	chr8:120911800-120917400	Weak transcription	Brain Angular Gyrus	brain
23	chr8:120912000-120915600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:120912000-120917400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:120912000-120918800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:120912200-120915000	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:120912200-120915800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:120912200-120923800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:120912400-120915800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:120913400-120915800	Weak transcription	Brain Hippocampus Middle	brain

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