Variant report

Variant	rs9656932
Chromosome Location	chr8:120875826-120875827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120867539..120869566-chr8:120874837..120876413,2	MCF-7	breast:
2	chr8:120875465..120877804-chr8:121095827..121097484,2	K562	blood:
3	chr8:120875408..120877601-chr8:120885500..120887601,2	K562	blood:

Variant related genes	Relation type
ENSG00000136982	Chromatin interaction
ENSG00000155792	Chromatin interaction
ENSG00000245330	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10086597	1.00[ASN][1000 genomes]
rs10088028	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10089043	1.00[ASN][1000 genomes]
rs10089416	1.00[ASN][1000 genomes]
rs10090726	1.00[ASN][1000 genomes]
rs10093746	1.00[ASN][1000 genomes]
rs10095185	1.00[ASN][1000 genomes]
rs10095406	1.00[ASN][1000 genomes]
rs10095508	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10095955	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10097203	1.00[ASN][1000 genomes]
rs10097757	1.00[ASN][1000 genomes]
rs10098362	1.00[ASN][1000 genomes]
rs10099163	1.00[ASN][1000 genomes]
rs10101222	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10101391	1.00[ASN][1000 genomes]
rs10101983	1.00[ASN][1000 genomes]
rs10102102	1.00[ASN][1000 genomes]
rs10102508	1.00[ASN][1000 genomes]
rs10104449	1.00[ASN][1000 genomes]
rs10105858	1.00[ASN][1000 genomes]
rs10106425	1.00[ASN][1000 genomes]
rs10109920	1.00[ASN][1000 genomes]
rs10109941	1.00[ASN][1000 genomes]
rs10110853	1.00[ASN][1000 genomes]
rs10113019	0.85[AFR][1000 genomes]
rs10505373	1.00[ASN][1000 genomes]
rs12334414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334539	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334592	1.00[ASN][1000 genomes]
rs12386813	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386881	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13439791	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1433949	1.00[ASN][1000 genomes]
rs16892875	1.00[ASN][1000 genomes]
rs16893011	1.00[ASN][1000 genomes]
rs16893021	1.00[ASN][1000 genomes]
rs16893034	1.00[ASN][1000 genomes]
rs2139432	1.00[ASN][1000 genomes]
rs2164021	1.00[ASN][1000 genomes]
rs28393075	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28436011	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28447970	1.00[ASN][1000 genomes]
rs28449953	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28502370	1.00[ASN][1000 genomes]
rs28517862	1.00[ASN][1000 genomes]
rs28529634	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28570063	1.00[ASN][1000 genomes]
rs28575743	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589493	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28636993	1.00[ASN][1000 genomes]
rs28637899	1.00[ASN][1000 genomes]
rs28673002	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28673290	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678910	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28684724	1.00[ASN][1000 genomes]
rs28701610	1.00[ASN][1000 genomes]
rs28723382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735236	1.00[ASN][1000 genomes]
rs28852781	1.00[ASN][1000 genomes]
rs4871029	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4871774	1.00[ASN][1000 genomes]
rs4871792	1.00[ASN][1000 genomes]
rs55834530	1.00[ASN][1000 genomes]
rs6469842	1.00[ASN][1000 genomes]
rs6469843	1.00[ASN][1000 genomes]
rs6980897	1.00[ASN][1000 genomes]
rs6981151	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984913	1.00[ASN][1000 genomes]
rs6986364	1.00[ASN][1000 genomes]
rs6989284	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990166	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998771	1.00[ASN][1000 genomes]
rs7006490	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7009770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010646	1.00[ASN][1000 genomes]
rs7010729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673603	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72673616	1.00[ASN][1000 genomes]
rs72673617	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72673639	1.00[ASN][1000 genomes]
rs72673643	1.00[ASN][1000 genomes]
rs72690149	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73702610	1.00[ASN][1000 genomes]
rs7831321	1.00[ASN][1000 genomes]
rs7833422	1.00[ASN][1000 genomes]
rs7843034	1.00[ASN][1000 genomes]
rs7843631	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956748	1.00[ASN][1000 genomes]
rs9693192	1.00[ASN][1000 genomes]
rs9987078	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9987272	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv427826	chr8:120642181-120953395	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120868800-120879200	Weak transcription	Stomach Mucosa	stomach
2	chr8:120868800-120885600	Weak transcription	Left Ventricle	heart
3	chr8:120869600-120885400	Weak transcription	Fetal Lung	lung
4	chr8:120875400-120876000	Active TSS	Brain Angular Gyrus	brain
5	chr8:120875400-120876000	Active TSS	Brain Hippocampus Middle	brain
6	chr8:120875400-120876000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:120875400-120876000	Enhancers	Colon Smooth Muscle	Colon
8	chr8:120875400-120876000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr8:120875400-120876200	Active TSS	A549	lung
10	chr8:120875400-120879200	Weak transcription	Hela-S3	cervix
11	chr8:120875600-120876000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:120875600-120876000	Active TSS	Placenta	Placenta
13	chr8:120875600-120876000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr8:120875600-120879400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:120875800-120876000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:120875800-120876000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:120875800-120876000	Flanking Active TSS	Liver	Liver
18	chr8:120875800-120876000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr8:120875800-120876000	Flanking Active TSS	HepG2	liver
20	chr8:120875800-120879200	Weak transcription	Ovary	ovary
21	chr8:120875800-120885400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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