Variant report

Variant	rs7010474
Chromosome Location	chr8:120867079-120867080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120843501..120846699-chr8:120865917..120869113,7	MCF-7	breast:
2	chr8:120866790..120869291-chr8:121456136..121458268,2	MCF-7	breast:
3	chr8:120865666..120868065-chr8:124407235..124409746,2	K562	blood:
4	chr8:120866730..120869816-chr8:120885660..120889126,4	MCF-7	breast:
5	chr8:120842870..120846971-chr8:120866583..120869973,4	MCF-7	breast:
6	chr8:120866641..120870729-chr8:120883446..120889946,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155792	Chromatin interaction
ENSG00000172167	Chromatin interaction
ENSG00000064313	Chromatin interaction
ENSG00000172172	Chromatin interaction
ENSG00000156802	Chromatin interaction
ENSG00000245330	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10086597	1.00[ASN][1000 genomes]
rs10088028	0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs10089043	1.00[ASN][1000 genomes]
rs10089416	1.00[ASN][1000 genomes]
rs10090726	1.00[ASN][1000 genomes]
rs10093746	1.00[ASN][1000 genomes]
rs10095185	1.00[ASN][1000 genomes]
rs10095406	1.00[ASN][1000 genomes]
rs10095508	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10095955	1.00[ASN][1000 genomes]
rs10097203	1.00[ASN][1000 genomes]
rs10097757	1.00[ASN][1000 genomes]
rs10098362	1.00[ASN][1000 genomes]
rs10099163	1.00[ASN][1000 genomes]
rs10101222	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10101391	1.00[ASN][1000 genomes]
rs10101983	1.00[ASN][1000 genomes]
rs10102102	1.00[ASN][1000 genomes]
rs10102508	1.00[ASN][1000 genomes]
rs10104449	1.00[ASN][1000 genomes]
rs10105858	1.00[ASN][1000 genomes]
rs10106425	1.00[ASN][1000 genomes]
rs10109920	1.00[ASN][1000 genomes]
rs10109941	1.00[ASN][1000 genomes]
rs10110853	1.00[ASN][1000 genomes]
rs10505373	1.00[ASN][1000 genomes]
rs12334414	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334592	1.00[ASN][1000 genomes]
rs12386813	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386881	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13439791	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1433949	1.00[ASN][1000 genomes]
rs16892875	1.00[ASN][1000 genomes]
rs16893011	1.00[ASN][1000 genomes]
rs16893021	1.00[ASN][1000 genomes]
rs16893034	1.00[ASN][1000 genomes]
rs2139432	1.00[ASN][1000 genomes]
rs2164021	1.00[ASN][1000 genomes]
rs28393075	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28436011	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28447970	1.00[ASN][1000 genomes]
rs28449953	1.00[ASN][1000 genomes]
rs28502370	1.00[ASN][1000 genomes]
rs28517862	1.00[ASN][1000 genomes]
rs28529634	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28570063	1.00[ASN][1000 genomes]
rs28575743	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589493	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28636993	1.00[ASN][1000 genomes]
rs28637899	1.00[ASN][1000 genomes]
rs28673002	1.00[ASN][1000 genomes]
rs28673290	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678910	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28684724	1.00[ASN][1000 genomes]
rs28701610	1.00[ASN][1000 genomes]
rs28723382	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735236	1.00[ASN][1000 genomes]
rs28852781	1.00[ASN][1000 genomes]
rs4871029	0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs4871774	1.00[ASN][1000 genomes]
rs4871792	0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs55834530	1.00[ASN][1000 genomes]
rs6469842	1.00[ASN][1000 genomes]
rs6469843	1.00[ASN][1000 genomes]
rs6980897	1.00[ASN][1000 genomes]
rs6981151	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984913	1.00[ASN][1000 genomes]
rs6986364	1.00[ASN][1000 genomes]
rs6989284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990166	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998771	1.00[ASN][1000 genomes]
rs7006490	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7009770	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010646	1.00[ASN][1000 genomes]
rs7010729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010887	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012755	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72673603	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72673616	1.00[ASN][1000 genomes]
rs72673617	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72673639	1.00[ASN][1000 genomes]
rs72673643	1.00[ASN][1000 genomes]
rs72690149	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73702610	1.00[ASN][1000 genomes]
rs7831321	1.00[ASN][1000 genomes]
rs7833422	1.00[ASN][1000 genomes]
rs7843034	1.00[ASN][1000 genomes]
rs7843631	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956748	1.00[ASN][1000 genomes]
rs9656932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693192	1.00[ASN][1000 genomes]
rs9987078	1.00[ASN][1000 genomes]
rs9987272	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv427826	chr8:120642181-120953395	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120845600-120867400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:120846000-120867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:120846200-120867200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:120846200-120867200	Weak transcription	Right Ventricle	heart
5	chr8:120846200-120867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:120846200-120867600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:120846200-120867600	Weak transcription	Gastric	stomach
8	chr8:120846200-120867600	Weak transcription	Pancreas	Pancrea
9	chr8:120846400-120867200	Weak transcription	Liver	Liver
10	chr8:120850200-120867400	Weak transcription	Ovary	ovary
11	chr8:120850400-120867200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:120850400-120867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:120852600-120867200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:120853000-120867600	Weak transcription	Aorta	Aorta
15	chr8:120856200-120867200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:120864000-120867200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:120865400-120867400	Weak transcription	Lung	lung
18	chr8:120865400-120868600	Active TSS	GM12878-XiMat	blood
19	chr8:120865800-120867200	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:120866000-120867200	Enhancers	HepG2	liver
21	chr8:120866000-120868600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:120866000-120868600	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr8:120866000-120868800	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr8:120866200-120867200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr8:120866200-120867800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr8:120866200-120868400	Active TSS	H1 Cell Line	embryonic stem cell
27	chr8:120866400-120867200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:120866400-120867200	Enhancers	NHLF	lung
29	chr8:120866400-120867600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:120866400-120867800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:120866400-120868800	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr8:120866400-120869000	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr8:120866600-120867200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:120866600-120867200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:120866600-120867400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:120866600-120867400	Flanking Active TSS	Dnd41	blood
37	chr8:120866600-120868600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:120866600-120869200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr8:120866800-120867200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr8:120866800-120867200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr8:120866800-120867200	Enhancers	Fetal Brain Male	brain
42	chr8:120866800-120867200	Active TSS	Fetal Intestine Large	intestine
43	chr8:120866800-120867200	Enhancers	Fetal Stomach	stomach
44	chr8:120866800-120867200	Enhancers	NH-A	brain
45	chr8:120866800-120867400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:120866800-120867400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr8:120866800-120867400	Enhancers	Primary B cells from cord blood	blood
48	chr8:120866800-120867400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr8:120866800-120867400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:120866800-120867400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links