Variant report

Variant	rs10113428
Chromosome Location	chr8:119534329-119534330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10090804	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10097320	0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10104444	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10104761	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10110626	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[ASN][1000 genomes]
rs10111755	0.93[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes]
rs11774748	0.86[ASN][1000 genomes]
rs11774993	0.93[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs12541156	0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12541178	0.93[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs12545989	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12548521	0.93[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs12549010	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12678125	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs13269467	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13278633	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13280603	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2515027	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515055	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515056	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2515059	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28574967	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327885	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4495457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4559272	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4625062	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469752	0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6469754	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6982778	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6984080	0.82[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7004852	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7012653	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7823933	0.88[ASN][1000 genomes]
rs7823939	0.88[ASN][1000 genomes]
rs7825490	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7825771	0.82[ASN][1000 genomes]
rs7826003	0.93[JPT][hapmap]
rs7836391	0.85[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs9297589	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119531000-119538000	Weak transcription	Brain Substantia Nigra	brain
2	chr8:119531200-119537200	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:119531200-119538800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:119531400-119536600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:119532000-119537000	Weak transcription	Stomach Mucosa	stomach
6	chr8:119532000-119538800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:119534200-119534600	Enhancers	Right Atrium	heart
8	chr8:119534200-119535400	Weak transcription	Brain Angular Gyrus	brain
9	chr8:119534200-119538000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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