Variant report

Variant	rs2515027
Chromosome Location	chr8:119511864-119511865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10090804	0.90[ASN][1000 genomes]
rs10097320	0.96[ASN][1000 genomes]
rs10104444	0.92[ASN][1000 genomes]
rs10104761	0.92[ASN][1000 genomes]
rs10110626	0.85[ASN][1000 genomes]
rs10111755	0.84[ASN][1000 genomes]
rs10113428	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11774748	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11774993	0.91[ASN][1000 genomes]
rs12541156	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12541178	0.91[ASN][1000 genomes]
rs12545989	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12548521	0.91[ASN][1000 genomes]
rs12549010	0.91[ASN][1000 genomes]
rs12678125	0.92[ASN][1000 genomes]
rs13269467	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13278633	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13280603	1.00[CEU][hapmap]
rs2515055	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515056	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515059	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28574967	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4327885	0.92[ASN][1000 genomes]
rs4495457	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs4559272	0.86[ASN][1000 genomes]
rs4625062	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469752	0.80[CEU][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6469754	0.80[ASN][1000 genomes]
rs6982778	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984080	0.94[ASN][1000 genomes]
rs7004852	0.98[ASN][1000 genomes]
rs7012653	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71505417	0.85[ASN][1000 genomes]
rs7823933	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7823939	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7825490	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825771	0.92[ASN][1000 genomes]
rs7826003	0.84[ASN][1000 genomes]
rs7836391	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9297589	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119502000-119522400	Weak transcription	Pancreas	Pancrea
2	chr8:119504800-119517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119507600-119518600	Weak transcription	Fetal Lung	lung
4	chr8:119510200-119512400	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:119510400-119517200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:119511400-119512200	Enhancers	Stomach Mucosa	stomach
7	chr8:119511400-119513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:119511800-119512800	Enhancers	GM12878-XiMat	blood

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