Variant report

Variant	rs10113525
Chromosome Location	chr8:39775845-39775846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11995570	1.00[CEU][hapmap]
rs28872470	0.88[AMR][1000 genomes]
rs6988758	0.89[YRI][hapmap]
rs7840765	0.86[ASW][hapmap];1.00[CEU][hapmap];0.80[LWK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9298586	1.00[CEU][hapmap];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39763200-39781600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:39763200-39783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39763400-39781000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:39763800-39780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:39763800-39781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
7	chr8:39771800-39781000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:39771800-39781000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:39772000-39781000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:39773400-39780000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:39773400-39782000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:39775200-39777200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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