Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr8:39781750-39782427	A549	lung:	n/a	n/a
2	TCF12	chr8:39781302-39782492	A549	lung:	n/a	chr8:39781984-39781993 chr8:39782448-39782456
3	POLR2A	chr8:39782405-39782566	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000254287	TF binding region

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39763200-39783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
3	chr8:39781000-39782800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39781000-39782800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:39781000-39782800	Enhancers	Fetal Lung	lung
6	chr8:39781000-39783000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:39781000-39783000	Enhancers	Adipose Nuclei	Adipose
8	chr8:39781000-39783200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:39781000-39786000	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr8:39781200-39783000	Enhancers	A549	lung
11	chr8:39781600-39783000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr8:39781600-39783000	Enhancers	K562	blood
13	chr8:39782000-39782800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:39782000-39783000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:39782000-39783000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:39782200-39782800	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:39782400-39782600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:39782400-39782600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:39782400-39783200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:39782400-39783800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:39782400-39787000	Weak transcription	HUVEC	blood vessel

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