Variant report

Variant	rs10113755
Chromosome Location	chr8:34802563-34802564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10095892	1.00[ASN][1000 genomes]
rs10100037	1.00[ASN][1000 genomes]
rs10100826	1.00[ASN][1000 genomes]
rs10102708	0.82[AFR][1000 genomes]
rs10103055	1.00[ASN][1000 genomes]
rs10103980	1.00[ASN][1000 genomes]
rs10105808	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112862	1.00[ASN][1000 genomes]
rs10112892	1.00[ASN][1000 genomes]
rs11985082	1.00[ASN][1000 genomes]
rs11985509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996585	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439316	1.00[ASN][1000 genomes]
rs16883296	1.00[ASN][1000 genomes]
rs16883314	1.00[ASN][1000 genomes]
rs16883318	1.00[ASN][1000 genomes]
rs16883376	1.00[ASN][1000 genomes]
rs28665220	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722910	1.00[ASN][1000 genomes]
rs4368974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4428666	1.00[ASN][1000 genomes]
rs59351220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632002	1.00[ASN][1000 genomes]
rs6995753	1.00[ASN][1000 genomes]
rs7017513	1.00[ASN][1000 genomes]
rs72629548	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72631003	1.00[ASN][1000 genomes]
rs7817114	1.00[ASN][1000 genomes]
rs7839246	1.00[ASN][1000 genomes]
rs7840788	1.00[ASN][1000 genomes]
rs7843585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517950	chr8:34797403-34803940	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10113755	WHSC1L1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34797400-34803800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:34801200-34804800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:34801800-34803000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:34801800-34803000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:34801800-34804400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:34802000-34802600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:34802000-34803200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:34802000-34804400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:34802200-34802600	Enhancers	Brain Germinal Matrix	brain
10	chr8:34802200-34803000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:34802400-34804000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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