Variant report

Variant	rs4368974
Chromosome Location	chr8:34824643-34824644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10095892	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100037	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100826	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103980	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105808	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112892	1.00[ASN][1000 genomes]
rs10113755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985082	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996585	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439316	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883296	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883314	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883318	1.00[ASN][1000 genomes]
rs16883376	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28665220	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722910	1.00[ASN][1000 genomes]
rs4428666	1.00[ASN][1000 genomes]
rs59351220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632002	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995753	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017513	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629548	1.00[ASN][1000 genomes]
rs72631003	1.00[ASN][1000 genomes]
rs7817114	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839246	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840788	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843585	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4368974	WHSC1L1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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