Variant report

Variant	rs10114438
Chromosome Location	chr9:16198488-16198489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10117629	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10122810	0.90[EUR][1000 genomes]
rs12337884	0.84[ASN][1000 genomes]
rs12343610	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12343611	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58804257	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7034501	0.89[EUR][1000 genomes]
rs7872577	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16193600-16202000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16193600-16202200	Weak transcription	NHLF	lung
3	chr9:16193800-16202000	Weak transcription	A549	lung
4	chr9:16196000-16198800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:16196000-16199800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:16196600-16198800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:16196600-16198800	Enhancers	Fetal Stomach	stomach
8	chr9:16196600-16198800	Enhancers	Left Ventricle	heart
9	chr9:16196800-16199000	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:16196800-16202000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16197000-16201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:16197200-16198600	Flanking Active TSS	HSMMtube	muscle
13	chr9:16197200-16201800	Weak transcription	NHDF-Ad	bronchial
14	chr9:16197400-16198800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:16197400-16199400	Weak transcription	Aorta	Aorta
16	chr9:16197600-16202600	Weak transcription	Fetal Lung	lung
17	chr9:16197600-16207200	Weak transcription	Ovary	ovary
18	chr9:16198000-16202000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:16198200-16202000	Weak transcription	NH-A	brain
20	chr9:16198200-16202200	Weak transcription	Osteobl	bone
21	chr9:16198200-16203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:16198400-16198800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16198400-16198800	Weak transcription	Fetal Kidney	kidney
24	chr9:16198400-16198800	Enhancers	Psoas Muscle	Psoas
25	chr9:16198400-16199600	Enhancers	Colon Smooth Muscle	Colon
26	chr9:16198400-16202000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:16198400-16202200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:16198400-16202800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links