Variant report

Variant	rs12343610
Chromosome Location	chr9:16202034-16202035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16201134..16203881-chr9:16231710..16234448,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10114438	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10117629	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10122810	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10122861	0.92[ASN][1000 genomes]
rs12343611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58804257	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7034501	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7872577	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16193600-16202200	Weak transcription	NHLF	lung
2	chr9:16197600-16202600	Weak transcription	Fetal Lung	lung
3	chr9:16197600-16207200	Weak transcription	Ovary	ovary
4	chr9:16198200-16202200	Weak transcription	Osteobl	bone
5	chr9:16198200-16203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:16198400-16202200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:16198400-16202800	Weak transcription	HSMM	muscle
8	chr9:16198800-16202600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:16198800-16202800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:16198800-16203200	Weak transcription	Fetal Stomach	stomach
11	chr9:16199600-16202800	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:16199600-16202800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:16199600-16203200	Weak transcription	Aorta	Aorta
14	chr9:16201400-16204200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:16201600-16203400	Weak transcription	Stomach Mucosa	stomach
16	chr9:16201800-16205800	Enhancers	NHDF-Ad	bronchial
17	chr9:16202000-16202200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:16202000-16202200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:16202000-16202800	Enhancers	HSMMtube	muscle
20	chr9:16202000-16202800	Enhancers	NH-A	brain
21	chr9:16202000-16203000	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:16202000-16203000	Enhancers	A549	lung
23	chr9:16202000-16203000	Enhancers	Hela-S3	cervix
24	chr9:16202000-16203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:16202000-16204400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:16202000-16204600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:16202000-16204600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:16202000-16205200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:16202000-16207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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