Variant report

Variant	rs10122861
Chromosome Location	chr9:16206120-16206121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10113994	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10117629	0.89[ASN][1000 genomes]
rs10122731	0.81[AMR][1000 genomes]
rs10122810	0.96[ASN][1000 genomes]
rs10125408	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962317	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10962318	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12341541	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12343610	0.92[ASN][1000 genomes]
rs12343611	0.94[ASN][1000 genomes]
rs12348548	0.80[EUR][1000 genomes]
rs12350437	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12352516	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28454050	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55654095	0.88[AMR][1000 genomes]
rs58804257	0.98[AFR][1000 genomes]
rs61377525	0.81[EUR][1000 genomes]
rs7022294	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7028997	0.97[AMR][1000 genomes]
rs7029038	0.91[AMR][1000 genomes]
rs7029598	0.97[AMR][1000 genomes]
rs7034501	0.89[ASN][1000 genomes]
rs72712821	0.84[AMR][1000 genomes]
rs7847385	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7868699	0.88[AMR][1000 genomes]
rs7872577	0.81[ASN][1000 genomes]
rs9406585	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16197600-16207200	Weak transcription	Ovary	ovary
2	chr9:16202000-16207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:16203400-16206200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16203600-16207200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:16203800-16206600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:16203800-16207000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:16204400-16207200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16204400-16207200	Weak transcription	Fetal Lung	lung
10	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:16204600-16206800	Weak transcription	HSMMtube	muscle
12	chr9:16204600-16207000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:16204600-16207200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:16204600-16207200	Weak transcription	Osteobl	bone
15	chr9:16204600-16213200	Weak transcription	NHLF	lung
16	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16204800-16207400	Weak transcription	HSMM	muscle
18	chr9:16205200-16207200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:16205800-16206200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:16205800-16206600	Weak transcription	NHDF-Ad	bronchial
21	chr9:16206000-16206200	Enhancers	Lung	lung
22	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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