Variant report

Variant	rs12350437
Chromosome Location	chr9:16207913-16207914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10113994	0.83[AMR][1000 genomes]
rs10122861	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10125408	0.80[AMR][1000 genomes]
rs10962317	0.83[AMR][1000 genomes]
rs10962318	0.80[AMR][1000 genomes]
rs12352516	0.83[AMR][1000 genomes]
rs28454050	0.80[AMR][1000 genomes]
rs58804257	0.89[AFR][1000 genomes]
rs7028997	0.86[AMR][1000 genomes]
rs7029038	0.80[AMR][1000 genomes]
rs7029598	0.86[AMR][1000 genomes]
rs7851398	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:16204600-16213200	Weak transcription	NHLF	lung
4	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16207400-16208000	Enhancers	Primary T cells from cord blood	blood
7	chr9:16207400-16213600	Weak transcription	Psoas Muscle	Psoas
8	chr9:16207400-16213600	Weak transcription	Right Atrium	heart
9	chr9:16207400-16214400	Weak transcription	Fetal Kidney	kidney
10	chr9:16207600-16212000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16207800-16208000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:16207800-16208000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:16207800-16208000	Flanking Active TSS	HSMM	muscle
14	chr9:16207800-16208200	Enhancers	Dnd41	blood
15	chr9:16207800-16208200	Enhancers	HSMMtube	muscle
16	chr9:16207800-16212200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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