Variant report

Variant	rs10962318
Chromosome Location	chr9:16184482-16184483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10113994	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10116579	0.97[EUR][1000 genomes]
rs10122731	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10122861	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10125408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962317	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12341541	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12348548	0.98[EUR][1000 genomes]
rs12350437	0.80[AMR][1000 genomes]
rs12352516	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28454050	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61377525	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7022294	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7028997	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7029038	0.81[AMR][1000 genomes]
rs7029598	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72712836	0.81[AMR][1000 genomes]
rs7847385	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9406585	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10962318	PYGL	trans	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16178800-16185000	Enhancers	Primary T cells from cord blood	blood
2	chr9:16179800-16184800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16179800-16184800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16179800-16192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:16181000-16184800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16183000-16185600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr9:16183600-16184600	Enhancers	Fetal Thymus	thymus
8	chr9:16184200-16185000	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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