Variant report

Variant	rs10114602
Chromosome Location	chr9:115631418-115631419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115616161..115618077-chr9:115630043..115631979,2	MCF-7	breast:
2	chr9:115630001..115632301-chr9:115634628..115637570,3	MCF-7	breast:
3	chr9:115628888..115632126-chr9:115633392..115636528,4	K562	blood:
4	chr9:115625288..115627848-chr9:115629822..115631773,2	K562	blood:
5	chr9:115629889..115631673-chr9:115633392..115635288,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10114623	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116897	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1041086	0.92[EUR][1000 genomes]
rs10739377	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10739378	0.87[EUR][1000 genomes]
rs10739379	0.87[EUR][1000 genomes]
rs10759603	0.87[EUR][1000 genomes]
rs10759604	0.87[EUR][1000 genomes]
rs10981534	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324930	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324931	0.85[EUR][1000 genomes]
rs1324932	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1475293	0.83[EUR][1000 genomes]
rs4978509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979170	0.92[EUR][1000 genomes]
rs4979173	0.92[EUR][1000 genomes]
rs4979175	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4979176	0.87[EUR][1000 genomes]
rs4979177	0.95[EUR][1000 genomes]
rs4979178	0.95[EUR][1000 genomes]
rs62576453	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023956	0.88[EUR][1000 genomes]
rs7026148	0.86[AFR][1000 genomes]
rs7047914	0.80[EUR][1000 genomes]
rs7873289	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2757351	chr9:115600623-115632898	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115594200-115634400	Weak transcription	NH-A	brain
2	chr9:115601200-115641200	Weak transcription	Fetal Brain Male	brain
3	chr9:115607400-115643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:115611400-115634600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:115611600-115634200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:115612000-115634600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:115613600-115642600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr9:115614000-115632600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:115615600-115639200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:115615600-115646400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:115621200-115639400	Weak transcription	Stomach Mucosa	stomach
12	chr9:115624200-115652600	Weak transcription	Fetal Heart	heart
13	chr9:115624800-115635200	Strong transcription	Primary T cells from cord blood	blood
14	chr9:115625600-115633400	Weak transcription	Right Atrium	heart
15	chr9:115625800-115645200	Weak transcription	Thymus	Thymus
16	chr9:115626000-115636200	Weak transcription	NHLF	lung
17	chr9:115626400-115634200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr9:115626400-115635000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:115626400-115635200	Strong transcription	Fetal Stomach	stomach
20	chr9:115626400-115650800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:115626600-115633800	Strong transcription	Liver	Liver
22	chr9:115627000-115647000	Weak transcription	Colonic Mucosa	Colon
23	chr9:115627200-115637200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:115627400-115633200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:115627600-115642000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:115627600-115646800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:115627800-115631600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr9:115627800-115640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:115628400-115633400	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr9:115628600-115632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:115628600-115632200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:115628600-115632400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:115628600-115640800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:115629200-115632000	Enhancers	GM12878-XiMat	blood
35	chr9:115629200-115633200	Enhancers	HepG2	liver
36	chr9:115629400-115633400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:115629600-115632600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr9:115629800-115632400	Enhancers	HSMMtube	muscle
39	chr9:115630000-115632000	Enhancers	Fetal Muscle Leg	muscle
40	chr9:115630000-115632600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:115630000-115633600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:115630200-115631800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:115630200-115631800	Genic enhancers	Fetal Intestine Small	intestine
44	chr9:115630200-115631800	Strong transcription	Rectal Smooth Muscle	rectum
45	chr9:115630200-115631800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr9:115630200-115631800	Enhancers	HSMM	muscle
47	chr9:115630200-115632400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:115630200-115632800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr9:115630200-115633000	Strong transcription	Left Ventricle	heart
50	chr9:115630200-115633200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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