Variant report

Variant	rs62576453
Chromosome Location	chr9:115629921-115629922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115623112..115625247-chr9:115625662..115630540,4	K562	blood:
2	chr9:115628888..115632126-chr9:115633392..115636528,4	K562	blood:
3	chr9:115588210..115591138-chr9:115628992..115630690,2	MCF-7	breast:
4	chr9:115625288..115627848-chr9:115629822..115631773,2	K562	blood:
5	chr9:115629889..115631673-chr9:115633392..115635288,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114602	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10114623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116897	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1041086	0.91[EUR][1000 genomes]
rs10739377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739378	0.86[EUR][1000 genomes]
rs10739379	0.86[EUR][1000 genomes]
rs10759603	0.86[EUR][1000 genomes]
rs10759604	0.86[EUR][1000 genomes]
rs10981534	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1324931	0.84[EUR][1000 genomes]
rs1324932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1475293	0.82[EUR][1000 genomes]
rs4978509	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4979170	0.91[EUR][1000 genomes]
rs4979173	0.91[EUR][1000 genomes]
rs4979175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979176	0.86[EUR][1000 genomes]
rs4979177	0.93[EUR][1000 genomes]
rs4979178	0.93[EUR][1000 genomes]
rs7023956	0.87[EUR][1000 genomes]
rs7026148	0.94[AFR][1000 genomes]
rs7873289	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2757351	chr9:115600623-115632898	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv825049	chr9:115628915-115630023	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv995366	chr9:115628915-115630109	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115577600-115630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr9:115582400-115630000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:115594200-115634400	Weak transcription	NH-A	brain
4	chr9:115601200-115641200	Weak transcription	Fetal Brain Male	brain
5	chr9:115607400-115643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:115607600-115630200	Weak transcription	NHEK	skin
7	chr9:115611400-115634600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:115611600-115630200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:115611600-115634200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:115611800-115630200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:115612000-115634600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:115613600-115642600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:115614000-115632600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:115614200-115630200	Weak transcription	Fetal Brain Female	brain
15	chr9:115615200-115630200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:115615600-115630000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:115615600-115630200	Weak transcription	HMEC	breast
18	chr9:115615600-115631000	Weak transcription	Psoas Muscle	Psoas
19	chr9:115615600-115639200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:115615600-115646400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:115616000-115630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:115616000-115631400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:115617000-115630200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:115618000-115630200	Weak transcription	HSMM	muscle
25	chr9:115620600-115631000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:115621200-115639400	Weak transcription	Stomach Mucosa	stomach
27	chr9:115623600-115630200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:115624200-115652600	Weak transcription	Fetal Heart	heart
29	chr9:115624400-115630200	Weak transcription	Right Ventricle	heart
30	chr9:115624800-115630200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr9:115624800-115631200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:115624800-115635200	Strong transcription	Primary T cells from cord blood	blood
33	chr9:115625600-115630600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr9:115625600-115633400	Weak transcription	Right Atrium	heart
35	chr9:115625800-115630200	Weak transcription	Left Ventricle	heart
36	chr9:115625800-115645200	Weak transcription	Thymus	Thymus
37	chr9:115626000-115636200	Weak transcription	NHLF	lung
38	chr9:115626400-115630400	Genic enhancers	Brain Hippocampus Middle	brain
39	chr9:115626400-115634200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr9:115626400-115635000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:115626400-115635200	Strong transcription	Fetal Stomach	stomach
42	chr9:115626400-115650800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr9:115626600-115630200	Enhancers	Primary B cells from cord blood	blood
44	chr9:115626600-115633800	Strong transcription	Liver	Liver
45	chr9:115626800-115630200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:115627000-115630200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:115627000-115647000	Weak transcription	Colonic Mucosa	Colon
48	chr9:115627200-115637200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:115627400-115630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:115627400-115633200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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