Variant report

Variant	rs10114669
Chromosome Location	chr9:72869402-72869403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72868706..72870705-chr9:73034414..73037199,2	K562	blood:
2	chr9:72868452..72871714-chr9:72871997..72874564,6	MCF-7	breast:
3	chr9:72865927..72868229-chr9:72869161..72871391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198887	Chromatin interaction
ENSG00000268364	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10114529	1.00[AMR][1000 genomes]
rs12004563	1.00[AMR][1000 genomes]
rs12005951	1.00[AMR][1000 genomes]
rs12339185	1.00[AMR][1000 genomes]
rs12342376	1.00[AMR][1000 genomes]
rs12351302	1.00[AMR][1000 genomes]
rs28659881	1.00[AMR][1000 genomes]
rs28851550	1.00[AMR][1000 genomes]
rs2975888	1.00[AMR][1000 genomes]
rs2975892	1.00[AMR][1000 genomes]
rs2997707	1.00[AMR][1000 genomes]
rs2997708	1.00[AMR][1000 genomes]
rs2997709	1.00[AMR][1000 genomes]
rs2997710	1.00[AMR][1000 genomes]
rs2997711	1.00[AMR][1000 genomes]
rs2997712	1.00[AMR][1000 genomes]
rs2997713	1.00[AMR][1000 genomes]
rs3015216	1.00[AMR][1000 genomes]
rs3015217	1.00[AMR][1000 genomes]
rs3015219	1.00[AMR][1000 genomes]
rs73647410	1.00[AMR][1000 genomes]
rs73647413	1.00[AMR][1000 genomes]
rs752781	1.00[AMR][1000 genomes]
rs752782	1.00[AMR][1000 genomes]
rs752783	1.00[AMR][1000 genomes]
rs752784	1.00[AMR][1000 genomes]
rs9314785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:72847400-72870800	Weak transcription	Pancreas	Pancrea
3	chr9:72855800-72870800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:72860600-72870800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:72867600-72870800	Weak transcription	Brain Angular Gyrus	brain
6	chr9:72867800-72870200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:72868000-72870200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:72868000-72870800	Weak transcription	Brain Substantia Nigra	brain
9	chr9:72868000-72871200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:72868000-72872600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:72868200-72869800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:72868200-72870400	Weak transcription	K562	blood
13	chr9:72868400-72870600	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:72868400-72870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:72868400-72870800	Weak transcription	Fetal Stomach	stomach
16	chr9:72868400-72871000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:72868600-72870400	Weak transcription	Small Intestine	intestine
18	chr9:72869000-72869800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:72869200-72870200	Weak transcription	Stomach Mucosa	stomach
20	chr9:72869200-72871600	Enhancers	Liver	Liver
21	chr9:72869400-72869600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:72869400-72870400	Weak transcription	HepG2	liver
23	chr9:72869400-72871000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:72869400-72871000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links