Variant report

Variant	rs10117085
Chromosome Location	chr9:85181109-85181110
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10114826	1.00[AMR][1000 genomes]
rs10118901	1.00[AMR][1000 genomes]
rs10123859	1.00[AMR][1000 genomes]
rs11139641	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139655	1.00[AMR][1000 genomes]
rs12337161	1.00[AMR][1000 genomes]
rs12348281	0.97[AFR][1000 genomes]
rs12353102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439987	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085582	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021753	0.81[AFR][1000 genomes]
rs7027542	1.00[MEX][hapmap]
rs7035647	0.81[AFR][1000 genomes]
rs7035686	0.81[AFR][1000 genomes]
rs7854783	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85180000-85181200	Enhancers	Fetal Muscle Leg	muscle
2	chr9:85180000-85181200	Enhancers	Fetal Stomach	stomach
3	chr9:85180200-85181200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:85180200-85181200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:85180200-85181200	Enhancers	Colon Smooth Muscle	Colon
6	chr9:85180400-85181200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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