Variant report
| Variant | rs7027542 |
|---|---|
| Chromosome Location | chr9:85066879-85066880 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr9:85066671-85066891 | A549 | lung: | n/a | chr9:85066724-85066735 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232749 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10081691 | 1.00[AMR][1000 genomes] |
| rs12342774 | 1.00[AMR][1000 genomes] |
| rs1571634 | 0.90[YRI][hapmap] |
| rs28485488 | 1.00[AMR][1000 genomes] |
| rs58724148 | 1.00[AMR][1000 genomes] |
| rs59095960 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60422971 | 1.00[EUR][1000 genomes] |
| rs6559669 | 1.00[EUR][1000 genomes] |
| rs7045382 | 1.00[EUR][1000 genomes] |
| rs73650724 | 1.00[EUR][1000 genomes] |
| rs73650725 | 1.00[EUR][1000 genomes] |
| rs73650726 | 1.00[EUR][1000 genomes] |
| rs73650727 | 1.00[EUR][1000 genomes] |
| rs73650728 | 1.00[EUR][1000 genomes] |
| rs73650729 | 1.00[EUR][1000 genomes] |
| rs7846870 | 0.82[YRI][hapmap] |
| rs7857253 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893507 | chr9:84799537-85097651 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv893508 | chr9:84954592-85080395 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv893509 | chr9:84954592-85097651 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv893510 | chr9:84954592-85117420 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85063000-85069400 | Weak transcription | Liver | Liver |
