Variant report

Variant	rs7846870
Chromosome Location	chr9:84889060-84889061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12345577	1.00[AMR][1000 genomes]
rs12351595	1.00[AMR][1000 genomes]
rs12352801	1.00[AMR][1000 genomes]
rs59095960	0.82[AFR][1000 genomes]
rs7027542	0.82[YRI][hapmap]
rs7862312	1.00[AMR][1000 genomes]
rs7862415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84884800-84890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:84886200-84890200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:84887200-84890400	Weak transcription	Osteobl	bone
4	chr9:84887200-84890600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:84888600-84889600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:84888600-84890000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:84888600-84890200	Weak transcription	HMEC	breast
8	chr9:84888800-84889200	Enhancers	HSMM	muscle
9	chr9:84888800-84889600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:84888800-84890200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:84889000-84889400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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