Variant report

Variant	rs12345577
Chromosome Location	chr9:84818814-84818815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10081691	0.83[AFR][1000 genomes]
rs12342774	0.83[AFR][1000 genomes]
rs12351595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28485488	0.83[AFR][1000 genomes]
rs7846870	1.00[AMR][1000 genomes]
rs7862312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7862415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84812600-84821200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:84816000-84821200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:84818600-84821400	Weak transcription	HMEC	breast
4	chr9:84818600-84821600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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