Variant report

Variant	rs73650729
Chromosome Location	chr9:85162592-85162593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60422971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6559669	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027542	1.00[EUR][1000 genomes]
rs7045382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73648484	1.00[EUR][1000 genomes]
rs73648486	1.00[EUR][1000 genomes]
rs73650724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650726	1.00[EUR][1000 genomes]
rs73650727	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7857253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85161000-85163800	Enhancers	Fetal Lung	lung
2	chr9:85161200-85164000	Weak transcription	Spleen	Spleen
3	chr9:85161200-85173400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:85161800-85167000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:85161800-85168600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:85162200-85163200	Enhancers	Fetal Stomach	stomach
7	chr9:85162400-85162600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:85162400-85162600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:85162400-85163800	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links