Variant report

Variant	rs73648484
Chromosome Location	chr9:85357230-85357231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60422971	1.00[EUR][1000 genomes]
rs6559669	1.00[EUR][1000 genomes]
rs7045382	1.00[EUR][1000 genomes]
rs73476041	1.00[AMR][1000 genomes]
rs73648486	1.00[EUR][1000 genomes]
rs73650724	1.00[EUR][1000 genomes]
rs73650725	1.00[EUR][1000 genomes]
rs73650726	1.00[EUR][1000 genomes]
rs73650727	1.00[EUR][1000 genomes]
rs73650728	1.00[EUR][1000 genomes]
rs73650729	1.00[EUR][1000 genomes]
rs7857253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1002297	chr9:85351450-85360245	Enhancers Weak transcription Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85348200-85361400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:85349800-85361600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:85350000-85364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85352200-85361200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:85352200-85364800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:85352400-85361600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:85353000-85361600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:85353200-85361600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:85354800-85358400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:85355200-85359800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:85356000-85358200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:85356200-85364400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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