Variant report

Variant	rs10117209
Chromosome Location	chr9:78800967-78800968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78796043..78797870-chr9:78799058..78801819,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10120025	1.00[AFR][1000 genomes]
rs10121458	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10124541	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78790400-78801400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:78790400-78802600	Weak transcription	Liver	Liver
3	chr9:78790400-78803200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:78790400-78803800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:78790400-78804200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:78790400-78805000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:78790400-78806200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:78790400-78806200	Weak transcription	Fetal Brain Male	brain
9	chr9:78790400-78806400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:78790400-78807400	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:78790400-78810200	Weak transcription	Brain Angular Gyrus	brain
12	chr9:78790400-78810400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:78790400-78810400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:78790400-78810400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:78790400-78811200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:78790400-78811400	Weak transcription	Fetal Lung	lung
17	chr9:78790400-78811400	Weak transcription	Right Ventricle	heart
18	chr9:78790400-78811600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:78790400-78813200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:78790400-78813600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:78790400-78818000	Weak transcription	Small Intestine	intestine
22	chr9:78792800-78802200	Strong transcription	Primary T cells from cord blood	blood
23	chr9:78794000-78809200	Strong transcription	Fetal Thymus	thymus
24	chr9:78794400-78814000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr9:78795600-78801800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:78795600-78803000	Weak transcription	Lung	lung
27	chr9:78796400-78801400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:78796400-78803400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:78796400-78809200	Weak transcription	Gastric	stomach
30	chr9:78796400-78809800	Weak transcription	HSMMtube	muscle
31	chr9:78796400-78816200	Strong transcription	Fetal Intestine Large	intestine
32	chr9:78796400-78818200	Weak transcription	Fetal Heart	heart
33	chr9:78796600-78806800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:78796600-78808400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:78796800-78806600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:78797000-78801800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr9:78797000-78803000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:78797000-78807000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:78797000-78809600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:78797000-78809800	Weak transcription	NHLF	lung
41	chr9:78797000-78811200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr9:78797000-78812800	Weak transcription	Esophagus	oesophagus
43	chr9:78797000-78820800	Weak transcription	Pancreas	Pancrea
44	chr9:78797200-78802000	Weak transcription	Fetal Intestine Small	intestine
45	chr9:78797200-78803200	Weak transcription	Aorta	Aorta
46	chr9:78797200-78803600	Weak transcription	Fetal Muscle Leg	muscle
47	chr9:78797200-78803600	Weak transcription	Dnd41	blood
48	chr9:78797200-78808600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:78797200-78809400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:78797200-78809600	Weak transcription	NH-A	brain

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