Variant report

Variant	rs10120025
Chromosome Location	chr9:78792185-78792186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10117209	1.00[AFR][1000 genomes]
rs10121458	0.90[AFR][1000 genomes]
rs10124541	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv466422	chr9:78775570-78796522	Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv614691	chr9:78775570-78796522	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3331389	chr9:78792001-78792285	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78790400-78792400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:78790400-78792800	Weak transcription	Primary T cells from cord blood	blood
3	chr9:78790400-78792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:78790400-78792800	Weak transcription	Fetal Heart	heart
5	chr9:78790400-78792800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:78790400-78792800	Weak transcription	Fetal Thymus	thymus
7	chr9:78790400-78793000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:78790400-78793000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:78790400-78793200	Strong transcription	Duodenum Mucosa	Duodenum
10	chr9:78790400-78793800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:78790400-78794000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:78790400-78794200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:78790400-78794400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:78790400-78794400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:78790400-78794400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:78790400-78794400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr9:78790400-78794400	Weak transcription	Adipose Nuclei	Adipose
18	chr9:78790400-78794400	Weak transcription	Aorta	Aorta
19	chr9:78790400-78794400	Weak transcription	Esophagus	oesophagus
20	chr9:78790400-78794400	Weak transcription	Fetal Intestine Small	intestine
21	chr9:78790400-78794400	Weak transcription	Fetal Stomach	stomach
22	chr9:78790400-78794400	Weak transcription	Left Ventricle	heart
23	chr9:78790400-78794400	Weak transcription	Ovary	ovary
24	chr9:78790400-78794400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:78790400-78794400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:78790400-78794400	Weak transcription	Thymus	Thymus
27	chr9:78790400-78794600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr9:78790400-78794600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:78790400-78794600	Weak transcription	Lung	lung
30	chr9:78790400-78794600	Weak transcription	Psoas Muscle	Psoas
31	chr9:78790400-78794600	Weak transcription	Stomach Mucosa	stomach
32	chr9:78790400-78795000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:78790400-78795000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:78790400-78795000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:78790400-78795200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:78790400-78795200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:78790400-78795200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:78790400-78795200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:78790400-78795200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:78790400-78795200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:78790400-78795200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr9:78790400-78795200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:78790400-78795200	Weak transcription	Placenta	Placenta
44	chr9:78790400-78795200	Weak transcription	Gastric	stomach
45	chr9:78790400-78795200	Weak transcription	Pancreas	Pancrea
46	chr9:78790400-78795200	Weak transcription	HMEC	breast
47	chr9:78790400-78795200	Weak transcription	HSMMtube	muscle
48	chr9:78790400-78795200	Weak transcription	NH-A	brain
49	chr9:78790400-78795200	Weak transcription	NHEK	skin
50	chr9:78790400-78795200	Weak transcription	NHLF	lung

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