Variant report

Variant	rs10117808
Chromosome Location	chr9:73209389-73209390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73207124..73209818-chr9:73212763..73214448,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60810117	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3433532	chr9:73207932-73210080	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73201200-73216200	Weak transcription	Lung	lung
3	chr9:73203000-73215200	Weak transcription	Fetal Brain Male	brain
4	chr9:73204600-73215200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:73205000-73209400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:73205000-73209400	Weak transcription	HSMMtube	muscle
7	chr9:73205000-73209600	Weak transcription	Brain Anterior Caudate	brain
8	chr9:73205000-73209600	Weak transcription	Left Ventricle	heart
9	chr9:73205000-73209800	Weak transcription	Brain Angular Gyrus	brain
10	chr9:73205000-73215000	Weak transcription	Brain Substantia Nigra	brain
11	chr9:73205000-73215200	Weak transcription	Right Atrium	heart
12	chr9:73205400-73214800	Weak transcription	NH-A	brain
13	chr9:73205400-73215600	Weak transcription	HMEC	breast
14	chr9:73205600-73209800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:73206200-73209400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:73206200-73209600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:73206200-73215000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:73206200-73215400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:73206400-73209400	Weak transcription	NHLF	lung
20	chr9:73206400-73212400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:73206400-73215000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:73206600-73209400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:73206600-73209400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:73206600-73227800	Weak transcription	Aorta	Aorta
25	chr9:73206800-73209600	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:73206800-73212600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:73207200-73209400	Weak transcription	NHDF-Ad	bronchial
28	chr9:73207600-73209600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:73209000-73209400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:73209200-73210000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:73209200-73210400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:73209200-73210400	Enhancers	HSMM	muscle
33	chr9:73209200-73210600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr9:73209200-73210600	Enhancers	Osteobl	bone
35	chr9:73209200-73210800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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