Variant report

Variant	rs60810117
Chromosome Location	chr9:73200921-73200922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10117808	1.00[AFR][1000 genomes]
rs2001378	1.00[AMR][1000 genomes]
rs2001379	1.00[AMR][1000 genomes]
rs7021166	1.00[AMR][1000 genomes]
rs73453879	1.00[AMR][1000 genomes]
rs73649176	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:73192800-73201000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:73193000-73201200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:73193000-73201200	Weak transcription	NHLF	lung
7	chr9:73193800-73201200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:73195800-73201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73196400-73203400	Weak transcription	HMEC	breast
10	chr9:73196600-73201400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:73196800-73201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:73196800-73204600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:73197000-73201000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:73197200-73201000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:73197200-73201200	Weak transcription	Brain Substantia Nigra	brain
16	chr9:73199400-73204000	Enhancers	Psoas Muscle	Psoas
17	chr9:73199600-73203400	Enhancers	Fetal Heart	heart
18	chr9:73199800-73201200	Enhancers	Aorta	Aorta
19	chr9:73199800-73201200	Enhancers	Left Ventricle	heart
20	chr9:73199800-73202000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:73200000-73205000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:73200200-73201000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:73200200-73201800	Enhancers	Right Ventricle	heart
24	chr9:73200200-73204200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:73200200-73205000	Enhancers	Right Atrium	heart
26	chr9:73200200-73207800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:73200600-73206800	Enhancers	Colon Smooth Muscle	Colon
28	chr9:73200800-73202200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:73200800-73203000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr9:73200800-73203200	Enhancers	Brain Angular Gyrus	brain
31	chr9:73200800-73204600	Enhancers	NHDF-Ad	bronchial
32	chr9:73200800-73205000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:73200800-73205600	Enhancers	Duodenum Smooth Muscle	Duodenum

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