Variant report

Variant	rs73649176
Chromosome Location	chr9:73192454-73192455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73026505..73029388-chr9:73191252..73194119,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17055326	0.81[AFR][1000 genomes]
rs2001378	1.00[AMR][1000 genomes]
rs2001379	1.00[AMR][1000 genomes]
rs60810117	1.00[AMR][1000 genomes]
rs7021166	1.00[AMR][1000 genomes]
rs7034786	1.00[AMR][1000 genomes]
rs73453879	1.00[AMR][1000 genomes]
rs73649177	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73187000-73192600	Weak transcription	Fetal Intestine Small	intestine
3	chr9:73187000-73193600	Weak transcription	Fetal Intestine Large	intestine
4	chr9:73188200-73192600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:73188400-73193200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:73188400-73195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:73188800-73193000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:73188800-73193000	Enhancers	NHDF-Ad	bronchial
9	chr9:73189000-73193400	Weak transcription	Pancreas	Pancrea
10	chr9:73189200-73194000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:73190400-73195600	Weak transcription	Brain Substantia Nigra	brain
13	chr9:73191200-73192600	Enhancers	Osteobl	bone
14	chr9:73191400-73195400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:73191800-73192600	Enhancers	Adipose Nuclei	Adipose
16	chr9:73191800-73192600	Enhancers	Duodenum Mucosa	Duodenum
17	chr9:73191800-73192600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr9:73191800-73192800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:73191800-73192800	Enhancers	Fetal Lung	lung
20	chr9:73191800-73192800	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:73191800-73192800	Enhancers	HMEC	breast
22	chr9:73191800-73193000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:73191800-73193000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:73191800-73193000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:73191800-73193000	Enhancers	Small Intestine	intestine
26	chr9:73191800-73193000	Enhancers	Stomach Mucosa	stomach
27	chr9:73191800-73193000	Enhancers	NHLF	lung
28	chr9:73191800-73193200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:73192000-73192600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:73192000-73192600	Enhancers	Colon Smooth Muscle	Colon
32	chr9:73192000-73192600	Enhancers	Hela-S3	cervix
33	chr9:73192000-73192600	Enhancers	HSMMtube	muscle
34	chr9:73192000-73192800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr9:73192000-73192800	Enhancers	HSMM	muscle
36	chr9:73192000-73192800	Enhancers	NHEK	skin
37	chr9:73192000-73193000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:73192000-73193000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:73192000-73193000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr9:73192000-73193000	Enhancers	HUVEC	blood vessel
41	chr9:73192000-73193000	Enhancers	NH-A	brain
42	chr9:73192000-73193400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr9:73192000-73193800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:73192200-73192600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:73192200-73192600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr9:73192200-73192800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:73192200-73192800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr9:73192200-73193000	Enhancers	Stomach Smooth Muscle	stomach
49	chr9:73192200-73193200	Enhancers	Fetal Heart	heart
50	chr9:73192400-73193400	Weak transcription	Right Ventricle	heart

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