Variant report

Variant	rs17055326
Chromosome Location	chr9:73193462-73193463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73026505..73029388-chr9:73191252..73194119,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17055164	0.86[ASN][1000 genomes]
rs17055288	0.86[ASN][1000 genomes]
rs17055297	0.86[ASN][1000 genomes]
rs17055308	0.86[ASN][1000 genomes]
rs17055309	0.86[ASN][1000 genomes]
rs17055312	0.86[ASN][1000 genomes]
rs17055314	0.86[ASN][1000 genomes]
rs17055319	0.86[ASN][1000 genomes]
rs17055322	1.00[ASN][1000 genomes]
rs3739775	0.83[ASN][1000 genomes]
rs4439195	0.86[ASN][1000 genomes]
rs57946612	0.86[ASN][1000 genomes]
rs58649393	0.86[ASN][1000 genomes]
rs73649176	0.81[AFR][1000 genomes]
rs73649177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv614598	chr9:73193371-73218656	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73187000-73193600	Weak transcription	Fetal Intestine Large	intestine
3	chr9:73188400-73195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:73189200-73194000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73190400-73195600	Weak transcription	Brain Substantia Nigra	brain
7	chr9:73191400-73195400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:73192000-73193800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:73192400-73194200	Weak transcription	Right Atrium	heart
11	chr9:73192400-73199800	Weak transcription	Left Ventricle	heart
12	chr9:73192600-73195200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:73192800-73195400	Weak transcription	HMEC	breast
16	chr9:73192800-73201000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:73193000-73195200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:73193000-73196000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:73193000-73196000	Weak transcription	HUVEC	blood vessel
20	chr9:73193000-73196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:73193000-73196400	Weak transcription	NHDF-Ad	bronchial
22	chr9:73193000-73201200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:73193000-73201200	Weak transcription	NHLF	lung
24	chr9:73193200-73193600	Enhancers	Fetal Intestine Small	intestine
25	chr9:73193200-73195200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr9:73193200-73198600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:73193200-73200200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:73193400-73193600	Enhancers	Pancreas	Pancrea
29	chr9:73193400-73194000	Enhancers	Right Ventricle	heart
30	chr9:73193400-73196200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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