Variant report

Variant	rs3739775
Chromosome Location	chr9:73144329-73144330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17055164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055308	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055309	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055312	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055319	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055322	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17055326	0.83[ASN][1000 genomes]
rs4439195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57946612	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57966195	0.87[ASN][1000 genomes]
rs58649393	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73649177	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73135600-73145800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:73141000-73146000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:73141000-73146000	Weak transcription	Osteobl	bone
4	chr9:73141000-73148800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:73141000-73149800	Weak transcription	NHLF	lung
6	chr9:73141200-73145200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:73141400-73144400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:73141400-73147000	Weak transcription	HUVEC	blood vessel
9	chr9:73143800-73145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:73143800-73145400	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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