Variant report

Variant	rs17055322
Chromosome Location	chr9:73192704-73192705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73026505..73029388-chr9:73191252..73194119,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17055164	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055288	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055297	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055309	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055312	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055314	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055319	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055326	1.00[ASN][1000 genomes]
rs3739775	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4439195	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57946612	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58649393	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73649177	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73187000-73193600	Weak transcription	Fetal Intestine Large	intestine
3	chr9:73188400-73193200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:73188400-73195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:73188800-73193000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:73188800-73193000	Enhancers	NHDF-Ad	bronchial
7	chr9:73189000-73193400	Weak transcription	Pancreas	Pancrea
8	chr9:73189200-73194000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:73190400-73195600	Weak transcription	Brain Substantia Nigra	brain
11	chr9:73191400-73195400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:73191800-73192800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:73191800-73192800	Enhancers	Fetal Lung	lung
14	chr9:73191800-73192800	Enhancers	Rectal Smooth Muscle	rectum
15	chr9:73191800-73192800	Enhancers	HMEC	breast
16	chr9:73191800-73193000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:73191800-73193000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:73191800-73193000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:73191800-73193000	Enhancers	Small Intestine	intestine
20	chr9:73191800-73193000	Enhancers	Stomach Mucosa	stomach
21	chr9:73191800-73193000	Enhancers	NHLF	lung
22	chr9:73191800-73193200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:73191800-73198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:73192000-73192800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:73192000-73192800	Enhancers	HSMM	muscle
26	chr9:73192000-73192800	Enhancers	NHEK	skin
27	chr9:73192000-73193000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:73192000-73193000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:73192000-73193000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:73192000-73193000	Enhancers	HUVEC	blood vessel
31	chr9:73192000-73193000	Enhancers	NH-A	brain
32	chr9:73192000-73193400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:73192000-73193800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:73192200-73192800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:73192200-73192800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr9:73192200-73193000	Enhancers	Stomach Smooth Muscle	stomach
37	chr9:73192200-73193200	Enhancers	Fetal Heart	heart
38	chr9:73192400-73193400	Weak transcription	Right Ventricle	heart
39	chr9:73192400-73194200	Weak transcription	Right Atrium	heart
40	chr9:73192400-73199800	Weak transcription	Left Ventricle	heart
41	chr9:73192600-73193000	Enhancers	Fetal Intestine Small	intestine
42	chr9:73192600-73195200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:73192600-73201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:73192600-73202200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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