Variant report

Variant	rs17055288
Chromosome Location	chr9:73161560-73161561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17055164	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055297	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055326	0.86[ASN][1000 genomes]
rs3739775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4439195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57946612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57966195	0.84[ASN][1000 genomes]
rs58649393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73649177	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73149200-73162200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73150600-73168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73151400-73168800	Weak transcription	Brain Substantia Nigra	brain
4	chr9:73154600-73169000	Weak transcription	Right Atrium	heart
5	chr9:73157800-73168800	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
7	chr9:73160800-73161600	Enhancers	Colon Smooth Muscle	Colon
8	chr9:73161000-73162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:73161000-73162400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:73161000-73162400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:73161200-73162800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:73161400-73162000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:73161400-73168400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73161400-73168400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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