Variant report

Variant	rs17055309
Chromosome Location	chr9:73180125-73180126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73168541..73170493-chr9:73179551..73181624,2	MCF-7	breast:
2	chr9:73172412..73175226-chr9:73179936..73182029,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17055164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17055326	0.86[ASN][1000 genomes]
rs3739775	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4439195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57946612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57966195	0.84[ASN][1000 genomes]
rs58649393	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73649177	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73170000-73189000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:73170200-73181200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:73170800-73188400	Weak transcription	Right Atrium	heart
5	chr9:73176200-73180400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:73176400-73180200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:73177200-73181400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr9:73177800-73180200	Enhancers	Fetal Thymus	thymus
9	chr9:73178000-73180200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:73178000-73181200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:73178400-73181600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:73178400-73183600	Weak transcription	Small Intestine	intestine
13	chr9:73178600-73181600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:73178600-73184000	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:73178800-73181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:73178800-73181400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr9:73178800-73181600	Weak transcription	HSMMtube	muscle
18	chr9:73178800-73181800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:73178800-73182000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:73179000-73181600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:73179000-73181800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr9:73179200-73180200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:73179200-73180200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr9:73179200-73181400	Enhancers	Primary T cells from cord blood	blood
25	chr9:73179200-73181400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr9:73179400-73180600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr9:73179400-73181400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:73179400-73182200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:73179600-73181000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr9:73179600-73181400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr9:73179600-73181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:73179600-73181800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:73179600-73188800	Weak transcription	Adipose Nuclei	Adipose
34	chr9:73179600-73188800	Weak transcription	Brain Anterior Caudate	brain
35	chr9:73179800-73181800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr9:73179800-73181800	Weak transcription	Placenta	Placenta
37	chr9:73179800-73181800	Weak transcription	Osteobl	bone
38	chr9:73179800-73183600	Weak transcription	NHDF-Ad	bronchial
39	chr9:73179800-73184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:73179800-73186600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:73179800-73188800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:73180000-73180200	Enhancers	Psoas Muscle	Psoas
43	chr9:73180000-73181000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:73180000-73181200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:73180000-73181200	Weak transcription	Pancreas	Pancrea
46	chr9:73180000-73181600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr9:73180000-73181600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:73180000-73181600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr9:73180000-73181600	Weak transcription	Fetal Lung	lung
50	chr9:73180000-73184200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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