Variant report

Variant	rs10118402
Chromosome Location	chr9:96128197-96128198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10125642	0.83[AFR][1000 genomes]
rs12341311	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12349453	1.00[AMR][1000 genomes]
rs16909013	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96124400-96128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:96126800-96128400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96126800-96128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:96126800-96129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:96126800-96130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96127200-96128200	Enhancers	Lung	lung
8	chr9:96127600-96128200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96127800-96128600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:96127800-96128800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:96127800-96129400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96127800-96129400	Strong transcription	Right Atrium	heart
13	chr9:96128000-96128200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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