Variant report

Variant	rs10125642
Chromosome Location	chr9:96131996-96131997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10115231	1.00[AMR][1000 genomes]
rs10118402	0.83[AFR][1000 genomes]
rs10121042	1.00[AMR][1000 genomes]
rs10121418	1.00[AMR][1000 genomes]
rs10125213	1.00[AMR][1000 genomes]
rs10125504	1.00[AMR][1000 genomes]
rs10992753	1.00[AMR][1000 genomes]
rs12336645	1.00[AMR][1000 genomes]
rs12336831	1.00[AMR][1000 genomes]
rs12338407	1.00[AMR][1000 genomes]
rs12339736	1.00[AMR][1000 genomes]
rs12340218	1.00[AMR][1000 genomes]
rs12344021	1.00[AMR][1000 genomes]
rs12351051	1.00[AMR][1000 genomes]
rs2150750	1.00[AMR][1000 genomes]
rs28391568	1.00[AMR][1000 genomes]
rs61256841	1.00[AMR][1000 genomes]
rs7021294	1.00[AMR][1000 genomes]
rs7034881	1.00[AMR][1000 genomes]
rs7847794	1.00[AMR][1000 genomes]
rs7864834	1.00[AMR][1000 genomes]
rs7868214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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