Variant report

Variant	rs10992753
Chromosome Location	chr9:96241243-96241244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96239164..96241265-chr9:96338853..96341666,2	K562	blood:
2	chr9:96235019..96236659-chr9:96239668..96242466,2	K562	blood:
3	chr9:96239972..96242150-chr9:96326116..96327649,2	MCF-7	breast:
4	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
5	chr9:96211777..96216293-chr9:96240145..96244458,5	MCF-7	breast:
6	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
7	chr9:96240211..96242392-chr9:96243662..96246042,2	MCF-7	breast:
8	chr9:96239024..96241783-chr9:96243346..96246055,2	K562	blood:
9	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	0.94[AFR][1000 genomes]
rs10117404	0.83[AFR][1000 genomes]
rs10118574	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10118955	0.83[AFR][1000 genomes]
rs10121042	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121548	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10122307	0.97[AFR][1000 genomes]
rs10125213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992758	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs12336645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337821	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs12338407	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340218	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344021	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406634	0.83[AFR][1000 genomes]
rs28464341	0.83[AFR][1000 genomes]
rs28630935	0.83[AFR][1000 genomes]
rs28666855	0.83[AFR][1000 genomes]
rs28728320	0.83[AFR][1000 genomes]
rs61256841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61467488	0.83[AFR][1000 genomes]
rs7021294	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870048	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs7871486	0.84[YRI][hapmap];0.83[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96230000-96242200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
4	chr9:96231600-96242000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:96231600-96242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:96231600-96242200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:96231600-96242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96231600-96242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:96231600-96242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96231600-96242600	Weak transcription	Lung	lung
11	chr9:96231600-96242600	Weak transcription	Right Atrium	heart
12	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
14	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
15	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
16	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
17	chr9:96231600-96256400	Weak transcription	NH-A	brain
18	chr9:96231800-96242000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:96231800-96242200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:96231800-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:96232400-96242200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:96232600-96241800	Weak transcription	Adipose Nuclei	Adipose
27	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr9:96232800-96242000	Weak transcription	Right Ventricle	heart
29	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr9:96233400-96242200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:96233400-96242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:96233600-96242200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:96233600-96243000	Weak transcription	Left Ventricle	heart
35	chr9:96233600-96245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:96233600-96246400	Weak transcription	Gastric	stomach
38	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr9:96233800-96244800	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:96233800-96245000	Weak transcription	Brain Substantia Nigra	brain
41	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
42	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:96234200-96241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:96234400-96243400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
49	chr9:96236000-96242600	Weak transcription	Psoas Muscle	Psoas
50	chr9:96236000-96243200	Weak transcription	Esophagus	oesophagus

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