Variant report

Variant	rs7870048
Chromosome Location	chr9:96270456-96270457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212662..96217709-chr9:96266725..96273295,11	MCF-7	breast:
2	chr9:96268450..96271013-chr9:96286354..96288528,2	K562	blood:
3	chr9:96264790..96266601-chr9:96268569..96271456,2	K562	blood:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992753	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992758	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12336831	0.84[YRI][hapmap]
rs12337821	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339736	0.82[ASW][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap]
rs12340218	0.82[ASW][hapmap];1.00[MKK][hapmap]
rs12340447	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344021	0.82[ASW][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs2150750	0.82[YRI][hapmap]
rs28406634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021294	0.84[YRI][hapmap]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7871486	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
5	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:96263200-96270600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
12	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
13	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:96264000-96273000	Weak transcription	Ovary	ovary
15	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
18	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
19	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
21	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
22	chr9:96264000-96286600	Weak transcription	NH-A	brain
23	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
26	chr9:96264600-96271600	Strong transcription	Primary T cells from cord blood	blood
27	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:96265800-96273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
32	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:96266000-96272200	Weak transcription	A549	lung
34	chr9:96266000-96273400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:96266000-96273600	Weak transcription	Brain Anterior Caudate	brain
36	chr9:96266000-96274000	Weak transcription	NHLF	lung
37	chr9:96266000-96275600	Weak transcription	Fetal Brain Female	brain
38	chr9:96266000-96279800	Weak transcription	HSMM	muscle
39	chr9:96266400-96271200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:96266600-96275600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:96266600-96279200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:96266800-96274200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:96267200-96271000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:96267200-96271000	Weak transcription	Fetal Intestine Large	intestine
45	chr9:96267200-96273400	Weak transcription	Fetal Lung	lung
46	chr9:96267200-96273600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:96267200-96275200	Weak transcription	NHEK	skin
48	chr9:96267200-96276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:96267200-96279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:96267200-96279800	Weak transcription	NHDF-Ad	bronchial

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