Variant report

Variant	rs7856259
Chromosome Location	chr9:96381626-96381627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96346772..96349327-chr9:96380904..96383527,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116959	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10117404	1.00[EUR][1000 genomes]
rs10118281	1.00[EUR][1000 genomes]
rs10118574	1.00[EUR][1000 genomes]
rs10118955	1.00[EUR][1000 genomes]
rs10121548	1.00[EUR][1000 genomes]
rs10121798	1.00[EUR][1000 genomes]
rs10123186	1.00[EUR][1000 genomes]
rs10123412	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992758	1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[EUR][1000 genomes]
rs12340447	1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28406634	1.00[EUR][1000 genomes]
rs28464341	1.00[EUR][1000 genomes]
rs28523540	1.00[EUR][1000 genomes]
rs28630935	1.00[EUR][1000 genomes]
rs28666855	1.00[EUR][1000 genomes]
rs28728320	1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58747030	1.00[EUR][1000 genomes]
rs58925215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[EUR][1000 genomes]
rs61636268	1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs7033089	1.00[EUR][1000 genomes]
rs73651245	1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870048	1.00[EUR][1000 genomes]
rs7871486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3356539	chr9:96378631-96382829	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96352400-96384600	Weak transcription	NHLF	lung
2	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:96363600-96383600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
5	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:96373400-96386200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:96373400-96387000	Weak transcription	Fetal Brain Female	brain
8	chr9:96373400-96390000	Weak transcription	Primary B cells from cord blood	blood
9	chr9:96374600-96399800	Weak transcription	K562	blood
10	chr9:96374800-96385400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:96375000-96382400	Weak transcription	Liver	Liver
12	chr9:96375000-96382600	Weak transcription	Hela-S3	cervix
13	chr9:96375200-96383200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:96375200-96383200	Weak transcription	Stomach Mucosa	stomach
15	chr9:96375200-96383800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
17	chr9:96375400-96385800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:96375600-96382800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:96375600-96383000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:96375600-96383200	Weak transcription	Brain Angular Gyrus	brain
21	chr9:96375600-96383600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:96375600-96383800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:96375600-96390000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:96375800-96383400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:96375800-96386200	Weak transcription	Dnd41	blood
26	chr9:96375800-96390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:96376400-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:96376600-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:96376800-96382000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:96376800-96383400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:96377000-96382200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:96377000-96382400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:96377200-96382200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:96377200-96389200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:96377800-96386600	Weak transcription	Fetal Kidney	kidney
37	chr9:96379200-96382200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:96379400-96381800	Weak transcription	HepG2	liver
39	chr9:96379400-96382600	Strong transcription	Fetal Intestine Small	intestine
40	chr9:96379400-96385800	Enhancers	Right Atrium	heart
41	chr9:96379600-96382600	Weak transcription	Brain Anterior Caudate	brain
42	chr9:96379600-96382600	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:96379600-96383600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:96379600-96390000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:96379600-96390000	Weak transcription	Aorta	Aorta
46	chr9:96379800-96381800	Weak transcription	Brain Germinal Matrix	brain
47	chr9:96379800-96382200	Weak transcription	Brain Substantia Nigra	brain
48	chr9:96379800-96382200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:96379800-96383000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:96379800-96383000	Weak transcription	Placenta	Placenta

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