Variant report

Variant	rs10121798
Chromosome Location	chr9:96319744-96319745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96316374..96320163-chr9:96337191..96341614,7	MCF-7	breast:
2	chr9:96318350..96320504-chr9:96329383..96332231,2	MCF-7	breast:
3	chr9:96319216..96322786-chr9:96325553..96328069,3	MCF-7	breast:
4	chr9:96212788..96214389-chr9:96318862..96321524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123186	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28406634	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:96285000-96327000	Strong transcription	Dnd41	blood
11	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:96285400-96327800	Strong transcription	Liver	Liver
13	chr9:96299200-96326800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:96299400-96324200	Weak transcription	Fetal Brain Male	brain
15	chr9:96299400-96327800	Strong transcription	Placenta	Placenta
16	chr9:96300400-96322400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr9:96301200-96327200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:96302000-96328000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:96304400-96328200	Strong transcription	Adipose Nuclei	Adipose
20	chr9:96305200-96326800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:96305200-96327000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:96305400-96327000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:96305400-96327200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:96305400-96327600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:96305800-96319800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:96307600-96329000	Weak transcription	Right Atrium	heart
27	chr9:96308800-96324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:96309600-96320200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:96309800-96320000	Weak transcription	Aorta	Aorta
30	chr9:96309800-96320000	Weak transcription	Pancreas	Pancrea
31	chr9:96311400-96326600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr9:96311400-96327000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:96311400-96327000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:96311400-96327000	Strong transcription	Fetal Thymus	thymus
35	chr9:96311600-96322000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:96311600-96326800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr9:96311800-96327000	Strong transcription	Fetal Intestine Large	intestine
38	chr9:96312000-96326600	Strong transcription	HUVEC	blood vessel
39	chr9:96312200-96320000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:96312200-96320400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:96312200-96326800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr9:96312200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:96312400-96320400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:96312400-96320800	Weak transcription	Fetal Kidney	kidney
45	chr9:96312400-96322200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:96312400-96324200	Weak transcription	Stomach Mucosa	stomach
47	chr9:96312400-96328000	Strong transcription	Hela-S3	cervix
48	chr9:96312600-96319800	Weak transcription	Small Intestine	intestine
49	chr9:96312600-96320200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:96312600-96324200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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